Scaffold Ga0190313_1007780

Overview

Basic Information

• Taxon OID: 3300022188
• Scaffold ID: Ga0190313_1007780
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-10-11_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4214
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5931
  • Depth (m): 1999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029623	Metagenome	187	Y
F035145	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190313_100778012	F029623	N/A	MNTYAKYVRARFERGNLIVEISKDAFKDAETKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALTIILMM
Ga0190313_10077808	F035145	GGAG	MRRDYNLKTIITEECCDLVRVEVICLTAKTSFPLLSLTYNRHTDNFVLTIERKFITQHSTLKALIEALENVREVVKGNASF