Scaffold Ga0196899_1015483

Overview

Basic Information

• Taxon OID: 3300022187
• Scaffold ID: Ga0196899_1015483
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2907
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009110	Metagenome	323	N
F030097	Metagenome	186	N
F050008	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_101548310	F050008	AGGCGG	MSLVNMNETQRELVLDLAEDFAPFVKKTEGGMALTRNHYGAYGSMMSKLSKGNRKLALVFSYALMMAGANGQGISDAMQAFFPE
Ga0196899_10154832	F009110	AGAAGG	MTESMIASAVRYMESLKDKVPPAGEDDIIVKHGTPHMRTLGIDPHEAVKAVDKLKATGLMVKDACEQVGMTRSQYYKTKKGITNRK
Ga0196899_10154833	F030097	N/A	MRAIDTAGTQSKISSCMGFMASGAARDAYRRLLTASTVGESKGEQRKSPFSRTTKEGTKK