NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0196899_1010136

Scaffold Ga0196899_1010136


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1010136 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3747
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045370Metagenome / Metatranscriptome153N
F067121Metagenome / Metatranscriptome126N
F080521Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_101013611F045370N/AMNRIFPTSSGTNVSGDLLKKAKQHIKTGKKFINKKVLPSATKNYKSYVAPTVGLFKGAANIATGVGKLALRNPLLAAGTYVAAKAFNPKGKFAKGKKFHEFGDAGKVLSKGGKKIFYG
Ga0196899_10101362F080521AGGAGMNINTVWNNTIDSISSVKDKVIDKYNSTNMNPFPKNVNVTVKFDLVGTYSDLLKKFDSMSDKDMQRIVDILEKKSEIIQKIIVNKLDK
Ga0196899_10101368F067121GAGGMINKIATLFVKKKPTFFEKAKSTATSYGSKAKAKGMDAFGKMQKTKLYKDASNSIGELSAKYKKLPKNYKTGIKVAGATAVVGGAYAAGKSKRKS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.