Scaffold Ga0196899_1008162

Overview

Basic Information

• Taxon OID: 3300022187
• Scaffold ID: Ga0196899_1008162
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4266
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F009001	Metagenome	324	Y
F012662	Metagenome / Metatranscriptome	278	N
F073484	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_100816213	F002528	N/A	SHSSDEANASLTPASTAALNDLPVIKILSEEEELFVKLNLEMEDKTHKMLVKWGKEVASDEDYISIAIRAGLEEYVDA
Ga0196899_10081622	F012662	N/A	MKEILLQPADMIEELMYHILWNEFDGKLDPDHKYFTLYVELQRLLDEETNRLEE
Ga0196899_10081623	F009001	GAG	MSVTIYLTDHRGKQIAFFYRIDSERYLTCPQLIWACRQHPEYQGTAESKEHFIEQAKDVMRELNKISQKTCSTCEKTLQGMEREGTKCSEHDFQ
Ga0196899_10081624	F073484	N/A	MKIDQPTENSLYVTIGNFTYYFDDSIEGDYFVQRWDKDNDDINDFELLQQYEDE