Scaffold Ga0196899_1002221

Overview

Basic Information

• Taxon OID: 3300022187
• Scaffold ID: Ga0196899_1002221
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9190
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003818	Metagenome / Metatranscriptome	467	Y
F026163	Metagenome	199	Y
F058111	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_100222115	F058111	N/A	MKPVVKNLRDILLYSDSYLFELFVGALHFFILPLAILEIGWLLDVQILGVLIGGFQLYSVGMKDMKCRYYACLAAFILAMITVVHYALVGMMAGSQLGWALVTLMAFINLYRTFNEKLHRGVVK
Ga0196899_100222116	F003818	N/A	MIVLHPNTEQYNALDGYRNGNSILKFVKDGSDKWIVGLQVLNDPNFSAIHDQLEQLERIEYIPIPDPEEL
Ga0196899_10022219	F026163	GAG	MQLIKRLIPFAISTLIALAALQPQRAFCQYSDSTIKEINQRLIKCIECEEKLTLYKELAKSDSTQIMNQASIITNQEQTIAKEKSKNKILRNVNAVQFALLVLALIL