Scaffold Ga0196899_1001271

Overview

Basic Information

• Taxon OID: 3300022187
• Scaffold ID: Ga0196899_1001271
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12562
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021885	Metagenome / Metatranscriptome	217	Y
F049303	Metagenome / Metatranscriptome	147	Y
F090093	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_100127117	F021885	AGGAG	MVTARGRIRGAKMRERRDLMNIFEKLKLLAEWSPLLTFAQRLAGEDDMHAKAVIVTEAMEWVASRTEVEWDDELASHISDILVSEEGEAFVRWILERMQVSDADTAE
Ga0196899_100127118	F049303	AGG	MQTLLNDPVRVLAVIAAAVVLVVPYLPAIAKRLRAAWASLPTVPQPSKDGIGVSDLTMVLDLANRLRLDGNEKATELAKQLLDAMLEVPQK
Ga0196899_100127119	F090093	GAGG	MNFRTIVVIACLYVSFFGLPNIELPSVQPPAPETPDVREPTKELRDAVADVADICESMDAFDRLVWMATWEDAAIIVAGEDEEVSVTFENTLGLRLFTESTFNVAWSRLAKASGKYAGLDDAVEQAFLTVLGNDVRPWSEMLSEDVVELYDALAWAGARSE