Scaffold Ga0196899_1000719

Overview

Basic Information

• Taxon OID: 3300022187
• Scaffold ID: Ga0196899_1000719
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16947
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (45.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F023809	Metagenome / Metatranscriptome	208	Y
F027765	Metagenome / Metatranscriptome	193	Y
F044463	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_100071922	F044463	N/A	MNQESKLIIAQMQIDNLLNLTKDGQYSAFISSHLLPVKYELQRQYHLLTSIKHYHRIGE
Ga0196899_100071923	F027765	GAGG	MNDEEILQFINAFEDFMIHAEGEIDSHQKWEEARKYTESFYEEKAAELEVTVDYYMAEFV
Ga0196899_100071929	F000345	AGGAG	LEQSLVKMTESNELGKALQEWWDSDAYKQLQKQNEEAKQRAVGKYFMLSESDKLDMVQAICYIMCKAESEGTSHRGVMDALGIYPAGFWIDNLMDAHNALWSYYHDKKREKDLQDDLESLDNFIK
Ga0196899_100071931	F023809	GGA	MYTIKLLAPVLMGLCADNFMNSQGEYCNPRHSNPHVVKYYEPGKSCYVNGTFYKKCEDRL