NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1000692

Scaffold Ga0196899_1000692


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1000692 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17217
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006343Metagenome / Metatranscriptome375N
F010828Metagenome298N
F058891Metagenome / Metatranscriptome134N
F101003Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0196899_100069214F006343N/AMKIELPNSWEGVTVKQFQALQKILAEKGDEYATNVAIISIMSGTPMDEIETYSLKTYAKCMNTLSFLTEQLVGEVQKAVEFGGVRYDVITDVYKLNGGQYITLMHLMKDPDKVIDQLHEIMAVFLVPKKRTWYGWKKQPYNADKHKEIAEQMLQAPMTIVQPLSAFFLTSYLKSAKHILESSVKKAEKVKRQAEKKLRRLKQNTDG
Ga0196899_10006923F010828N/AVKQQAAIDLLADEELHELAEKLCNCPDDLIQEVAMVLLEMTEEKWQQINEGGYLRFYVVRTMMTMATSPRSSFSKLYDLHNHKKVDHEREDYDWEKEEDISLIETLMQELHWYDREVLKLWLEEGSYRKVAKKVDIPYKSIGNTVKKTIETLRANYYGIHLERLIRERVKLPLD
Ga0196899_10006924F101003GAGMEYILSGLSASVLSYLWIEVFGIDLLMKKWLAMDESQSFKPLDCRLCLSFWFGVLYCANDPEALLYIPLLSVLVERLMWRFEI
Ga0196899_10006927F058891AGGMDKKQVLLFIKERQEALSRMKAAKFSGRITREEQKLYQEAWSYIDPKAKVCFTCGRSPQIMSVALLNYYEANKPKRRKKK
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Institute for Fundamental Biomedical Research
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