Basic Information | |
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Taxon OID | 3300022187 Open in IMG/M |
Scaffold ID | Ga0196899_1000692 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17217 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F006343 | Metagenome / Metatranscriptome | 375 | N |
F010828 | Metagenome | 298 | N |
F058891 | Metagenome / Metatranscriptome | 134 | N |
F101003 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0196899_100069214 | F006343 | N/A | MKIELPNSWEGVTVKQFQALQKILAEKGDEYATNVAIISIMSGTPMDEIETYSLKTYAKCMNTLSFLTEQLVGEVQKAVEFGGVRYDVITDVYKLNGGQYITLMHLMKDPDKVIDQLHEIMAVFLVPKKRTWYGWKKQPYNADKHKEIAEQMLQAPMTIVQPLSAFFLTSYLKSAKHILESSVKKAEKVKRQAEKKLRRLKQNTDG |
Ga0196899_10006923 | F010828 | N/A | VKQQAAIDLLADEELHELAEKLCNCPDDLIQEVAMVLLEMTEEKWQQINEGGYLRFYVVRTMMTMATSPRSSFSKLYDLHNHKKVDHEREDYDWEKEEDISLIETLMQELHWYDREVLKLWLEEGSYRKVAKKVDIPYKSIGNTVKKTIETLRANYYGIHLERLIRERVKLPLD |
Ga0196899_10006924 | F101003 | GAG | MEYILSGLSASVLSYLWIEVFGIDLLMKKWLAMDESQSFKPLDCRLCLSFWFGVLYCANDPEALLYIPLLSVLVERLMWRFEI |
Ga0196899_10006927 | F058891 | AGG | MDKKQVLLFIKERQEALSRMKAAKFSGRITREEQKLYQEAWSYIDPKAKVCFTCGRSPQIMSVALLNYYEANKPKRRKKK |
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