Scaffold Ga0196899_1000397

Overview

Basic Information

• Taxon OID: 3300022187
• Scaffold ID: Ga0196899_1000397
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23114
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004106	Metagenome	453	Y
F005704	Metagenome / Metatranscriptome	392	Y
F016805	Metagenome / Metatranscriptome	244	N
F084178	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_100039723	F005704	AGG	MDNRLSLLGGLLALLTTVVATTVTIDSRYAKSAEVKQQFCQARKQQLRDRIFELDLKANKTPNDKALREYLQQQLNDGC
Ga0196899_100039725	F016805	N/A	VDPFLTPLVTAAIIAGVGALWRIDKRASVMDTRMALILEQITALRSDHKERLDDHEQRLRQIESRS
Ga0196899_100039729	F084178	GGA	MIVEFSVEEELRIESQARTVLHCGDSQQVAKLCASLVKQNAYLSRLVRQATGHITQLELMQVLEGLDKPDPERSETVRLLCESGNWDLTHQNDTRDRSLFVTLLLIALAPFPWLVGAFAGLLTTVMRTMTQVIRGLAS
Ga0196899_10003975	F004106	AGGA	MSHSSAEIDPSYSIGADFVNSTDAQAGRWNRITILKNNTSFSALTAQNWTGNSIVGESLPAGFEIQGVFTAFALSSSGAVVAYKI