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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022187 Open in IMG/M |
| Scaffold ID | Ga0196899_1000193 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31950 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (52.94%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003409 | Metagenome / Metatranscriptome | 488 | Y |
| F019473 | Metagenome | 229 | N |
| F091955 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0196899_10001931 | F091955 | N/A | MIIGLLEAFTLMNEEKVFLNYETQHRKTMKELIQLAESIGELAKLPETTQELIQAQHNVINTQSARIQNLENRLNGLPSSDEVSGKIREIMVPALNEFLKEFKESTKIDDHMLLIDPENPDDSLEKAIKLGQEIQEPFWEEGEERFQKEFGNSPSGPGWYGSTHMPVITLLFSGSQYRFHNTIRIPGRFQMRSVTRWGPAIRTLGDGDKVLKVESIFGWNPCVGHPIGIYTEPATELPSGMIVRPFEQDIRDCMIVAHNNSVPVYLAQNPDRLQIVNNNIQAHQGSNIGIFHGPHIDADWMPKSARS |
| Ga0196899_100019331 | F019473 | AGG | VRQEIILKMTMKKWIELAFLCTAILTLSGCSTLEKATGWAFEQDVQTQILDGKEITSTNWVVRPSVENGLRITGSIAPGAGSIVSEAVIALLGAFAAWRGRKWKKAAVDAVEAGQQFKKALDKSNGKNKIAGIIEGLKSQQKSNGTFEFIKSILNKI |
| Ga0196899_100019333 | F003409 | N/A | MDQKINYLRSQIAGIEAQLAADNGKSTILQLLGKAKALLNAREELSEPVNRANTEALLTQVVAAVNAYNAANQITMDSVDDILAGFDAAVAPADEPAPADKPADAPVE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |