Basic Information | |
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Taxon OID | 3300022183 Open in IMG/M |
Scaffold ID | Ga0196891_1004869 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2792 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009699 | Metagenome / Metatranscriptome | 314 | Y |
F016269 | Metagenome / Metatranscriptome | 248 | Y |
F025275 | Metagenome | 202 | Y |
F029600 | Metagenome | 188 | Y |
F032639 | Metagenome / Metatranscriptome | 179 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0196891_10048691 | F016269 | N/A | MKVNDFIFLCEEYNIDPVIASEDEGVRKILKTPTSDVNQQLMLSGYLHKHF |
Ga0196891_10048692 | F025275 | N/A | MKYYALLHGVCGLAEGYSDTTVRWFNDLDKAMEAKQSLLARLMETEHEEIVSSTDGMQDIVIIDDDNSEHEIVKIIELKPMWPTSSSVREWFVWDQMNCEAPYDGDYMPTDMAVIKDLCERQEAVADTFDIETFHEFVNDLWYGGAAMFDADDICIYYFKLPKLTD |
Ga0196891_10048693 | F029600 | N/A | MKYWNGEGEYQDLFDKHWKNLVPESGRADTAEGNAMRAIAKINYDIFNNGAGNIVDQVEEMGDDEEYYTDYSINRWWEEYFDDIEEFSGLNADRLKRKIMEYVQYDKDYGLSDLMDDYIDYIVLKVDNQLVTK |
Ga0196891_10048694 | F032639 | N/A | MLNKNKKLINEDGFYAGSELMWGMDDVRNVLERFGRATTTSKADVERILIAAFQDNYRLMETIDKAIGDTIVYMIEEGQLKTDEQ |
Ga0196891_10048695 | F009699 | N/A | MTDKEAQAFMQKVDSSAQFWQELHDEDAPTMQIEGSTVPRCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAIHSELIGRLKEQNDAKQEQETD |
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