Scaffold Ga0181353_1048020

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1048020
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014840	Metagenome	259	Y
F033405	Metagenome	177	Y
F048799	Metagenome	147	Y
F050979	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10480201	F048799	AGGA	MIKSKNLLIKQGAVYGVKHPLKMIDDGAQLSAVMNLKNTQNKRGKIVANANLNNFSPEARLAIREFEAWQMKVFKKNAKKGWRFFNPDAFNKPTPRSAREAWGAPYESEDQIEKDEKITNRIMLGLFFAFVVVLSIL
Ga0181353_10480202	F033405	GAGG	MVSNYKKKTDEELIEAVNQYMEKYPKATRNQIVLHATGNAERVRKLAKENKIKLPKALPKGTNSSWGKYFSLSVENNAKRKGTKYNV
Ga0181353_10480203	F014840	GAG	MIPFSYAVIDDEGEVIRKYRWSVKEAKWFTEKNPHVKVIKLDKEPKQTQPQIQQELFNLVGEATY
Ga0181353_10480204	F050979	N/A	KSKRHANPLKTKTGKDRLKALALKVLYEMLDKVQEPGKKRAKIAKEIARREVK