Basic Information | |
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Taxon OID | 3300022179 Open in IMG/M |
Scaffold ID | Ga0181353_1048020 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1122 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014840 | Metagenome | 259 | Y |
F033405 | Metagenome | 177 | Y |
F048799 | Metagenome | 147 | Y |
F050979 | Metagenome | 144 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181353_10480201 | F048799 | AGGA | MIKSKNLLIKQGAVYGVKHPLKMIDDGAQLSAVMNLKNTQNKRGKIVANANLNNFSPEARLAIREFEAWQMKVFKKNAKKGWRFFNPDAFNKPTPRSAREAWGAPYESEDQIEKDEKITNRIMLGLFFAFVVVLSIL |
Ga0181353_10480202 | F033405 | GAGG | MVSNYKKKTDEELIEAVNQYMEKYPKATRNQIVLHATGNAERVRKLAKENKIKLPKALPKGTNSSWGKYFSLSVENNAKRKGTKYNV |
Ga0181353_10480203 | F014840 | GAG | MIPFSYAVIDDEGEVIRKYRWSVKEAKWFTEKNPHVKVIKLDKEPKQTQPQIQQELFNLVGEATY |
Ga0181353_10480204 | F050979 | N/A | KSKRHANPLKTKTGKDRLKALALKVLYEMLDKVQEPGKKRAKIAKEIARREVK |
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