Scaffold Ga0181353_1031473

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1031473
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1405
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F043818	Metagenome / Metatranscriptome	155	Y
F061577	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10314731	F043818	GGAG	MKLKNTIATILEESQDEYFCQFCTKPKVGSLPICSCSGNWFRLSDFDFDTQFSIAQQIFNSQKGVPNQKSD
Ga0181353_10314732	F015970	AGGAG	MTAFNKAMWEAYQQLNDDDIIEAISGSVAIPLAIKSGDWEYAFQFIRDRIENKMTRRAEFALYNIIKTSLIDDDDELRTLRTLWLKNEYRGDKDET
Ga0181353_10314733	F042184	AGG	MELDIDFCDLEIDIKAWVEWEYDPEYSPNEGVYDKFIWVAYLQIGNNRIDITDELSAKECKQIEKQIEESIDDSI
Ga0181353_10314734	F061577	N/A	MPRPKTEMTKSGKTIAVRATLTEWNEFKRLGGAKWLRPFLAKSIEKHQQTKETK