Scaffold Ga0181353_1024476

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1024476
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019448	Metagenome	229	Y
F023041	Metagenome	211	Y
F061549	Metagenome	131	Y
F100663	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10244762	F023041	AGGAG	MNNPPYDTGKVKIGLTYSPPPPECTPESDWIQGILLGDKQGMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA
Ga0181353_10244763	F061549	GGAG	MKYRVQVVMSYWQTVEVEADSSADAGNKAFDEFDITKARVGEGQTYDTELIDKVKYVVRNHNHTVLGVFDNEHDAEKDAKEYRDQTGNPAYVDKEYGE
Ga0181353_10244765	F019448	AGGAG	MTAITKTQMVNACADYEVNWFFDREPAEQKEVFRHIMLHGIRGFKNYPDDSLFTVCVDKGIFLMEE
Ga0181353_10244766	F100663	N/A	MNDYNASFGIYPRAVSAHSANYDETAYDFPDDEDGFVQPTPDDIACALTEADVETVEVWLDQMPAYTITTLLHCYTPEPLSYTHRDDLCFAEQGVYDMLMEGDASGLISSVTKSYGSVGIVAEVMCYYLQWDVRQPLLLKPVLPALLT