Scaffold Ga0181353_1021678

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1021678
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1690
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10216782	F000957	N/A	MSSFRHLDGMVALLSEVYEINERIMTGDICSAKTAIQSDRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0181353_10216785	F003714	GAG	MPNANHPYTETLTFAGRVLPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAEALGTTVGTLRSWLDITGTQWVNLNKRGPYRRQK
Ga0181353_10216786	F042864	N/A	RAMTELLKRKAINFREAASLKDRDGCVKGLGSYALYGVDHIRGQLVVLASEPTAGDFNKYVTAKAKAEVVARYDHVVEYRDAGSHSNPKVTILCWTKAE