Scaffold Ga0181353_1016087

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1016087
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1940
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025977	Metagenome / Metatranscriptome	199	Y
F048942	Metagenome / Metatranscriptome	147	Y
F071153	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10160871	F025977	N/A	MTEIFIKIIQQGLTPNAYYVLHCIKDKIVPHSSINKDLECKRLQSGAWLTEDLQLTDKSIIFTTEIEGYFKKSKKKTSKDLLGHNFMQNIEAYVTIFPNKKLSSGKYARVPPKNLENAFRWFFETYNYDWETIFLATQKYVNEYESKNYEYMRNSQYFL
Ga0181353_10160873	F048942	N/A	MIKAKELKDDAILEIKVNKSFYLMTKAASFVVLQGMNIQDKGDEYFKSILTKKYEDLDDQQRTFYTLVLLLAEIERKATEENLYTEKEILEPGDEGYVAPSIQD
Ga0181353_10160874	F071153	GGA	MFSGKFIKKNGKLTYATPQDKLAYEIFVDMISEGEVIDMFLEVSSPDHSKAQLAKVHACIRELAKESGYTFDEMKQVIKEHAGLAGKSFGDCSKSDLMLAIEACIQIGRENYNINLG