Scaffold Ga0181353_1012944

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1012944
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2130
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003687	Metagenome / Metatranscriptome	473	Y
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y
F030408	Metagenome	185	Y
F035274	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10129441	F015587	N/A	STQLMTALHIRKNLAALLVNTAAAVENAKLPDKEAARTKLNEYRLRAAALMMPNDMAFVITPKNNI
Ga0181353_10129442	F021097	N/A	MTTNHFVDSCVAIVLGTGCGLLLSVGGQKLLNQHYKRTCHAQPGHNLIYTKGFLGDTYYCINAKYMN
Ga0181353_10129443	F003687	AGGA	MTPKAVEYLLTQDARLLARRDAPVIDQELEAQRQAALELFFEWQDGMRQFQELVPFVAIVQRKVDLNRDLLQWERKQLEQD
Ga0181353_10129444	F035274	N/A	MLTIGKEDLDKAIAMFKIDDYYISCKTSECYLHWVALTEQAREYIDAYFECLDVLIDGQWVDTYGSHEQGNPVSLPDQDYIACRYILVTN
Ga0181353_10129446	F030408	N/A	MTFTIALVTDRSGRYAHVWGEPRGWNQFVEQLEDAGCEVIEDQTEDWEGSTKDEVAEDCLTVHQLLHDTDFIPH