NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1008411

Scaffold Ga0181353_1008411


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1008411 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2545
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. CFD-1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F006107Metagenome / Metatranscriptome381N
F009398Metagenome / Metatranscriptome318N

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10084113F009398N/AMTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAITDANTPVAGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTIDQGTTFSRLQREDSGFVLLENTDRIALTFCKPRPVVGRTLMYQGRTLRILSCRVDASGAYYSLDLGAKTK
Ga0181353_10084114F005024N/AMRPVVNMTVDSSRFDAALKQYLLATTRDLDKAVNARMFYLMVRLFVLVPPKSPASERARIADYLSKPLGDINRKSKKTGKRIGKSRLLRRVHLIAQARERKAGRRGLYGEEMKQAASAVYRKAIGSVGYLRSGVVKAIRVFNKGFSQYDKPKWKPLVKPAGYKAPKKPNAALVAIANQYGLPAENVAVHKGTRAKGFQAVPGWNPTASVLMQSGIADNQLGRVKSIYDSSMQKAYDDELAELSTHLTDALLANGQVLVDNGIDIK
Ga0181353_10084115F006107N/AMNGVAPRAEKALVDYLASGNWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSNSARPMQRTDLTCEVNIEVELQLSADDTDEADMLTTVAALDSLILPLFDANGASVLDADQDNASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL
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