Scaffold Ga0181353_1006802

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1006802
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2758
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F005348	Metagenome / Metatranscriptome	403	Y
F012455	Metagenome / Metatranscriptome	280	Y
F047494	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_100680210	F047494	AGGA	MNSTINKVCKHTPNKNAISIVHDERFTFCEDCEQNITSHYREDNDFMSYWTSWKVGK
Ga0181353_10068022	F000808	AGGA	MEYNYALTTSYDGELIHTLRVSDMLTAVDAWNKCVDYGFAKEYATYNLSDPTGKMYTKTFYANGKVSIK
Ga0181353_10068025	F005348	AGG	MINSVMSFDCNECSGAGLIFWGDNLDYNVEQCDCKDFAIGTLFTSGEAN
Ga0181353_10068029	F012455	N/A	MLKEIKNKITRIQELRRSNAATAIPNKKKYSRKIKHKNKLQ