Scaffold Ga0181353_1006509

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1006509
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2806
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009328	Metagenome / Metatranscriptome	319	Y
F011385	Metagenome / Metatranscriptome	291	Y
F095367	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10065093	F011385	AGGGGG	MTEAFFIGYAVGILTGYVAWAPETRFKKHFVDGLTLRFLWRKK
Ga0181353_10065094	F009328	GGAGG	MSIEAMKEGYYCVICGRFLPADEHGVIVHDDIEHPQEMDFGDEENQQ
Ga0181353_10065096	F095367	GGAG	MSIEAMKQALEALEQINQLSVGENAIALPGEIDAAMDNLRAAIEQAEKRKWVELTDDEARALVNRVTFGDRTNWQALIYIVDAKLKEKNHG