Scaffold Ga0181353_1005013

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1005013
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3096
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F017972	Metagenome	237	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10050131	F017972	GGAGG	VRTRHLQLVSSEHSDTTHNSESVRSHFGPVNPASTTWLAQETLRANQEAQLTELLSSLENVVANLNYKSFEVYDTLCTAIETVSVALSGTQIESAGTE
Ga0181353_10050132	F003863	GGAGG	MESKEVSGKQAIEYRNYRRARDRALVRLSHLYADEYRQLLVEERELDEQEGKKWVGVADNTRLTITTRTRANAVPDVAGRTDYDRENEGYNGGEA
Ga0181353_10050134	F000821	AGGTGG	MNREYLEAKVDLCLDQAEKNIKEEDIALAIKNLERANSAMARLFGLEEDSE
Ga0181353_10050136	F003212	GGAGG	MKDKYLVTLEIETYDGDPRAWDWQTLLGYEDQVKVVETQFKGRALPEEGESNE
Ga0181353_10050139	F018135	AGG	MTVERVRHSGAYVISDFVGEGAGEYLFTRTYYGYTLKQAKAQFKMALKEAK