Scaffold Ga0181353_1003288

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1003288
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3614
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015718	Metagenome / Metatranscriptome	252	Y
F018350	Metagenome / Metatranscriptome	235	Y
F048258	Metagenome	148	N
F099299	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10032881	F048258	GGTGG	VEYMGIINNGEYDNSKMDMLLSKYPMVNKQWKYVGSSDTIRWSLGDVVKNMYIGNGGNLVDKDGMNPMDVFNEGYINGAVERRGYDNVYSYFIRQVEYSRMVSDNGGQEYYIKHHNDVSELMSDPWGRRFIKYMGIVRNDMVDKYSDVYEGLSVQGSRTGSRNVICSVDVTSIEGHRVYCLHLYS
Ga0181353_10032882	F018350	N/A	MTFKEIVNKYPIVNTDWECNHIGSMTHRIMAVTGIDSCIYHGMKQFHQYLGISGYFSRIRKDDGSGVIFNSDPWMREFKMYYTRRGIKNGIYECTRIDGVNGGNDVYIMVTSVEGSRVWCMDVFER
Ga0181353_10032884	F015718	AGGA	VKIVPIIRDGKIVMGDINEQYPVTNVAWKYVNDMTLGEYLGSLGVDIKTYGFIKSFPRSFYLRIGFYEPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGNDIYNCYVHVTTVSGKPVYCVDVLN
Ga0181353_10032885	F099299	N/A	MTKSELKQLIKEVINETLTVESYEDGIKDVKDRMAYLALRKQEKDYISKSKQSSSLIKKQHYMDMSKQVLDKALAILKKHKVID