Scaffold Ga0181353

Basic Information
Taxon OID	3300022179 Open in IMG/M
Scaffold ID	Ga0181353_1002456 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300022179 Open in IMG/M

Scaffold ID

Ga0181353_1002456 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4010
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4010

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001799	Metagenome / Metatranscriptome	632	Y
F056607	Metagenome	137	Y
F102704	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10024562	F056607	AGG	MATAPVYYSDKLVKEFIDKEFAGKTGDALYQAVANEAVNRGVSAEQLGRVLGFDTAAVNQYATDIGKPLVAEAKVLDTVIDNAYNQQFGRDATEAEKANAKTYLTTGGNSLAGTGALNYSTEGYNYDTQSIISGYRSALGRNPTQTEYVSEMAKLGYDPFNASVLGTAKNLSANVAALESDPFAGRYANVNPYGTYDLSTMTTKLDSTLPNISKNVSGNVVQFINPVTQKPIVTSFVDGKLVVKEGVNTLTGEQAQAAINLALGTGALTGTEYKNLTGALANAQSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLQQAQANSTGVQALVDKIAAENGGRLPANFSVGALAQANNVPFQFGQDVYNKAYATDAGQKINTLAKTPTSPLNFNPQNIYQAPIVAGQMRELFPSFGESKRLAQGLINQRPTTQSIVNMIQGLPADNTLGLNTMQNNVVGAPTSLNNVLGMIGK
Ga0181353_10024563	F102704	N/A	MNYQELRSLVGGSNPQDATYQDIVSGIQSQYRPQTQFAPTTSLLDMIGTQLPDQPRIAYGSLLQALPRVLPTPMTPVKNVDAAASLDSGVINLGNLDTGKITGNTAIDNTLVYNNDFTKNTGGVNLDTSGVSNGLFGTKVTGTDIANVAGTVAPIAALAGNSDLVKTAIALNLIGSAADIKTEEDVLNLGTKIAMLAAGPAGNVLAAGLGLASNNTPLTVNALLGLTNPTLSLVNSIAGNLTGYSLGDIVNGLLNAPEGSVSEYGLLGAANLANTADASRRRAGAAYDTMDANTLRVLAELGDQEAIATIRSITSGGTSTYNPISDLGTARGNSYFNLFTPVGGVAKPNPTITRAILAE
Ga0181353_10024564	F001799	GAGG	LLNNDKAILAQWAKNLLNDDFFKEVIDNLKKEQISVIINTSAEECDRREDAYRHIKSIELITGHLEGLASETVIKEKKWKIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181353_1002456

Overview

Ecosystem & Geography

Associated Families

Sequences