Scaffold Ga0181353_1001288

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1001288
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5050
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042880	Metagenome	157	Y
F052570	Metagenome / Metatranscriptome	142	N
F064681	Metagenome	128	Y
F078660	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_100128810	F042880	GAGG	MASYTTIGELIEHLKEEDSNAPIIYQYYLAEHFEISEEVFGQVAGDFDSLIPCSDSYEVISREIDSKREEVNA
Ga0181353_100128811	F052570	GGAGG	MRKMKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTSDVALLTYQGREYRVVCVGEMRILYKGEIIRYCDDLIRAGIKRDKDLSKIDDSGGEWINNSWFEVYDYGSNEYTGEVYHEVKDAIETVANWIIDEELVNA
Ga0181353_100128819	F078660	AGGAGG	MKLTNFYEVMDHKGEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDVTALVLATITSERGKA
Ga0181353_10012884	F064681	AGCAGG	VKHNLTECDNTSTAYFDECDECGELSACICLASIVDEWEIEKVGKEGESFAYRYQFKEKASDLVARFGYASTYREAMDNIAHAVKCKEVSK