Scaffold Ga0181353_1001282

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1001282
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5055
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009514	Metagenome	316	N
F010315	Metagenome	305	Y
F012661	Metagenome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_100128212	F012661	AGG	MASKSKKPLNSTGLVVYFSEQEKIALRHIGNGSASEGARVSIRWAAHFWNVGLRPDHNLNHVGLSLFVDDEYADDL
Ga0181353_10012824	F009514	AGG	MTNQQIKALQSIGKGIIESCNIDSIGAPSGAIYAALMGHGASLNQFNSIMDTLVKHGFLTHDSECHTYHATDSGMTWANKVGA
Ga0181353_10012828	F010315	N/A	VLIVNNLFEEFQGADIERLADCLAAIRKAGLKVDKYTQAGVNQSSGNVWVWSEDWSGCVACSIGFDVFWVYSCRECGEEFEFETYSELEEFSENNQDDCTMCRTEEVTA