Basic Information | |
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Taxon OID | 3300022179 Open in IMG/M |
Scaffold ID | Ga0181353_1001238 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5109 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F045069 | Metagenome | 153 | N |
F081291 | Metagenome / Metatranscriptome | 114 | Y |
F102853 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181353_10012382 | F045069 | GGAGG | MRYLLLLLTASAMAAEPDHLTYTNDISVRTVLTQTKPSWCLGMRMAFDIDGLDRAYYGCWVPMQGFAHIEMLDGSRRVIALDKFTKPKQEAAK |
Ga0181353_10012384 | F081291 | GGAGG | VKRIDYWKAKLKAAQTEERIRQKELNQMAKAFERALEQVDDIQKRIEHEKAKLAGPE |
Ga0181353_10012388 | F102853 | GAG | MKELVLVYYAAIVVATVGFLAFFIPEPRRPTAAECGVAEITPDMSARDREVCRQLRQHRHRM |
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