Scaffold Ga0181353_1000762

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1000762
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6321
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F012211	Metagenome / Metatranscriptome	282	N
F078383	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10007621	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPDDIADAIADSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDGPFQQMFDE
Ga0181353_100076210	F002764	AGGA	MKEPEDEAFEELAKRQGDWGLQGSRKHQIIRFAENNARNEVIEEVAQHIEKCSLAFGKDTIQSFTAYVRGMKK
Ga0181353_100076214	F078383	GGA	MKTKGGARPGSGRKPTQISESRALTLWKDGLSKKEIAKRFGIDYEAILYFFRKHKIFNRGKLKSQAPQKPR