Scaffold Ga0181353_1000078

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1000078
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 19314
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F042290	Metagenome / Metatranscriptome	158	Y
F056552	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_100007819	F001120	N/A	MTKKSLISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNASPNGVKGSVSIPGTGLSIPNIKLI
Ga0181353_100007821	F001807	GGAGG	MTVLAIEDTYFTQTHVTVTAVVDDMRLLYRATRFDPEEWAPALCQATIELDPEEPIPLDEDGFCSYLDQLDPLWQLLDVTDDY
Ga0181353_100007834	F042290	N/A	MTLTYRGVKYEQEDQAQKDKAWWNLAHRPWLCLTYRNICYFPYVTGGQIK
Ga0181353_100007839	F002985	N/A	MSYVIACWRWGTPHAITANSEANQFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLACKELSIQDESRFRK
Ga0181353_100007844	F056552	N/A	MTPTHDQFTLLYEDEHTKLLYEFKALVADDVINHLVDFLKGCGYMESSIFECMKESSEAYFDSLSTQQYVMKW