Scaffold Ga0181353_1000017

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1000017
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 40075
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (86.30%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059762	Metagenome / Metatranscriptome	133	N
F070999	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10000176	F070999	AGGA	MNHAANGRSVISISPGVAGVASAGTHTVAIDCLGYDSVSIDVCYRSLANTSAPSVVAIRHSDTDGSYATISGLVQGTDYSLAGVSNTAVVNVTRFEIPTKALRRYLQVSVTPSADATANGTNNDIVVAARLGRGEVGVDSASDANVTNRVVLG
Ga0181353_100001771	F059762	GGAG	MSDSKIRRKSKVHPFTLSTATSVANTIPMFDMAGGIVEMGTVNTNATQLNLWVSDVEAGPFYQLYDKDGAVVKITLSASTTDGRAYSMPDEVFAAHFIKFVSATTNSTGTVGTVMFKG