Scaffold Ga0196887_1038684

Overview

Basic Information

• Taxon OID: 3300022178
• Scaffold ID: Ga0196887_1038684
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1280
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196887_10386841	F004163	AGGAG	MKQTIEQLKRIVLDLKHYFEKSLPLILIGVALGYAFANHLETQRAEPVEIGFATVEDMSFLVQELKECKDNTLDGSY
Ga0196887_10386842	F022314	AGG	MVKTREELKLSDMVRLVRHEPPEDAWHDFSKESQDKMGVGLVVSIEELNPYKDAPEKKWVEYTVLWSGIGEQLKHLGFDLIKITGEEI
Ga0196887_10386843	F012625	GAG	MDPLHNKTINVGDLVREHTKHSKQRIGLVHEIISNYYLVVKWLDGSVDKRHRNKYEVTKFIDGETYPNYLQDYIQGKRW