Scaffold Ga0196887_1009730

Overview

Basic Information

• Taxon OID: 3300022178
• Scaffold ID: Ga0196887_1009730
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3139
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F016474	Metagenome	247	N
F016595	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196887_10097301	F002077	N/A	MNLLPQKTTQRDISPQQEQFLTNLFENGGNVTDAALSAGYSKGSVTWLKTSLADEIIHRTKNVLSMHAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQE
Ga0196887_10097304	F016595	AGGAGG	MGYFFRCNECNYKETFNDQFNIPQKALEGKLNDYESVICSGCVSKKTRLKGNYIIIEKGTRNANI
Ga0196887_10097305	F016474	AGGA	METKTYLLKHEYDQDKKEMISKPCQINMRWKIYDTFACLEIIGVEHQAETIKHQLICHKDQTIKILNSLNEQIEHEADLEPCTKDRFYFNESVGIQWGLHGQLDLEDAIASKKEGS