Scaffold Ga0196887_1008145

Overview

Basic Information

• Taxon OID: 3300022178
• Scaffold ID: Ga0196887_1008145
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3524
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F019158	Metagenome	231	Y
F057352	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196887_100814511	F019158	N/A	MTIVIDSEDTQGIDAALKIARLMHVKYVGTAAAHKESFGKIEFIKMLRKFMKESVAHMQDEEDNQVKDIGDMHNLRNAKRFADRIFRGER
Ga0196887_10081455	F057352	AGGAG	MKLWVLHGTYEGEMFSSIHLTEKGCALAAITDILDFLNVDDRDSALSVMRDIYAYTENEKAIQEAKEPFEWDYDKMKQMSSKDLWKIFADWTEISWDRMADRNYNIDATPQMVQA
Ga0196887_10081456	F010950	N/A	MNIWVVRHTCLYDNESYVSSHLTEKGALITAIKTVRSDMCDGIDEDEMEDMRPGLPHNPEEDLMQYSREQLRGIVEDWWEYSWDINEQAQYQIYETQVEA