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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022178 Open in IMG/M |
| Scaffold ID | Ga0196887_1001435 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10351 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (15.62%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.124826 | Long. (o) | -75.260873 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008453 | Metagenome | 333 | Y |
| F009699 | Metagenome / Metatranscriptome | 314 | Y |
| F019909 | Metagenome / Metatranscriptome | 227 | Y |
| F020259 | Metagenome | 225 | N |
| F024111 | Metagenome / Metatranscriptome | 207 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0196887_100143511 | F009699 | N/A | MMTDKQALAFMQKVDSSAPFWKELHDENRPTMNVQGTPTPRCLYNLMITRRDVSLYAKIGMKPHRLWKIGDVKAYFGLKGGKQKIADAINAIHDELIGRLENQDDE |
| Ga0196887_100143512 | F020259 | N/A | MNEQVMTSFIEWAERVEKQTQENSLINAQDILHDVFGMLRDDEHFLPRL |
| Ga0196887_100143514 | F019909 | AGAAG | MTNLMTNFEQHIGQALPQAILAHLNDSPIDMLDKQARKLEFDSWCPIAMENDSPELRKELKEASELLFKWIDFQSVTK |
| Ga0196887_100143519 | F008453 | N/A | MQNYAVYRVYKDWNKRPKTLMDGLTREQAQTIVRNTPSNDNSMVVFDEEPRDKQWGRKQ |
| Ga0196887_10014353 | F024111 | N/A | MNQPIFAFVFPFDSGAEFRCKRNFLDAESAANWALEIILKEGDEHCYFKEVESSEHVFEPALESHSVVCWRDDAPTWEVYDVID |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |