Scaffold Ga0212031_1010199

Overview

Basic Information

• Taxon OID: 3300022176
• Scaffold ID: Ga0212031_1010199
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1317
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F022403	Metagenome / Metatranscriptome	214	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212031_10101991	F022403	N/A	MLLDEHRYRLAENLAAAEGKRLTAMLREMVYAALEKAVPASDYKAAEAADKAAWAESVQRRVQGRMRSKQEGKVSESDA
Ga0212031_10101992	F006109	N/A	MTRYVVMVDNRWVTAVYGPGNGIGLTAAQDDASSWVTYERAVAAARAVAQCTNSHVAIHSVEEPSYPKSWK
Ga0212031_10101993	F017122	N/A	MEVVPFQNQLDPELRLGEGRSRTSAEHTELFELKIWLPGQGAMRDVVRAESLQQAITFATNRYPNCRVEVPSTAAKKPRLVRSSMGPKEAARKRLKIVEAKREQS
Ga0212031_10101994	F043896	GGAGG	VSNPEIADWARQAWGEVIVDQSRADLIEKLYEWDGRSNPEHPYHHTYTGLYLKYTEN