Scaffold Ga0212031_1000048

Overview

Basic Information

• Taxon OID: 3300022176
• Scaffold ID: Ga0212031_1000048
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5697
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031083	Metagenome / Metatranscriptome	183	N
F088826	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212031_100004811	F031083	AGGAGG	MKTEYKMGLGLPRGSKVIVKAGNRQADITLVEQEDGHTWRLQIDRDFPETEYPTLENAILSAETLFREVV
Ga0212031_10000482	F088826	AGCAG	MNRKINKQNKFACVLSYSGKTRKCFARDWDHLKQRAPDAIRRTWYLWANLNLDHLDQVSQNEWHGKIISVCGKPILCKVYDRADRVKEAARLLGAIGGASGKGKKKVRGDSNYYRLLRYKGIEKKRKKDAGTQSK