Scaffold Ga0190366_1000484

Overview

Basic Information

• Taxon OID: 3300022170
• Scaffold ID: Ga0190366_1000484
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-9-10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9497
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011723	Metagenome	287	Y
F016235	Metagenome	248	Y
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190366_100048412	F016235	GGAGG	MGEGENLSPPLFSHTKWRHREGYQKCVRKVGLSRNADFYGKGFPLCAVIKFKFPVIRYAPRTCEIAKLLATLRVLYGDDYMRELNALAELEYLKMVRNREWEHLLREVED
Ga0190366_10004842	F011723	AGGGGG	MVIYNKGLNRDNSTDEGKEIFSLTSKEEEKYKVRRIIITDVNTNPLLMEIWVERDRIGEAIPLETASDIAPERVIDVDVEIPVGYTFSVKIKPQTSGSQGSVRGWVEYEIIE
Ga0190366_10004847	F091133	GAG	MGLLDVWDTFTDFVTDWWDAFKNKIGDIKNELWSWVDGIAKYWVERANEFWDILNHTWSEVEDLMEQAKSYADDIVTDAVLKVDKWVSEFGETVAELWNKIEPYFTSMITPIENAIDTIQNIKLPSLEDITNSLKSTVDDILNWDIPILNQSISDLWTEANEIWNEIWNNIWTSLNNAWDDINNLWKTINEIPADLWNAIIEGWDGLCDFLLSQGEKFVEKILDIDLPIDDVIEELEKRIKGGGK