Scaffold Ga0196903_1009823

Overview

Basic Information

• Taxon OID: 3300022169
• Scaffold ID: Ga0196903_1009823
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1194
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001416	Metagenome / Metatranscriptome	699	Y
F030418	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196903_10098232	F030418	GAG	MRRVVPTAIGFATGGPLGAATAAVGTERQLKQKKVMERQEFMYQQDPGLSQGFSGVQPSTASAGSGSFFGNVGQSLGDFGRGVGQFFQDVAPLTDVLGIGGSNRRMAPQAATTIIRQAPDETATSGEILGANLGMGANLIQAAGRFVRSPGGQAALGFGAGAVGAALSGGANGAPRITRRMKSDVRKIYMMAGMDPNATAQILNNLGTYPRMNFDASLVFFILTKRFRNDGPVVTKAAVRKTKSTLRRMKGVVDMYNSVCKPTAQRRRAAPSRAKAVQLISNK
Ga0196903_10098233	F001416	AGG	MPLVKKRIFLAAGATSDQVLAGTTYEYVDPNTVIRVAAAVDTAGTSATADTTMDFTVNNAEFS