NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196885_100931

Scaffold Ga0196885_100931


Overview

Basic Information
Taxon OID3300022140 Open in IMG/M
Scaffold IDGa0196885_100931 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)829
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001319Metagenome / Metatranscriptome723Y
F013703Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0196885_1009311F001319AGGAGGMKKLWSIVLLCGIVFGQLPQPTLVGQDDLKVPTLSINNFVNQAEIVGLEDTRVFLGITNILTENVMDSRYELVENDSDFELTARVVYLGKPRTSTTILGLFRRETTTTEVRVVVELKNKKTGVVRTGNGTGTIDREISSTGFQINEELPFDRSELGGALKEAIGNAVQNI
Ga0196885_1009312F013703N/AENFLNLNMMYGYRFPIQFRKNTINLQTFVSYTLFRYFEGLKTENKYLLLESPILIYPGASIDINFTETFKMNFGFNVGYNTLVNDLGERNISYSIIFGTNF

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