Scaffold Ga0224906_1073125

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1073125
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1050
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F014969	Metagenome	258	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10731251	F014969	AGG	LKINNYPFGKKNDRPNYYYTQDVYSDGQGITGQIKKRKNKNV
Ga0224906_10731253	F005656	AGGA	MKLRTLLNIQRSVEERAIPSDVLEFDSTHYSKSKDAEINILDLHLTHAIRILNNYLNDTLYPEYPDRLVINDSLRGIRDRVEDISEVVNK
Ga0224906_10731254	F025411	N/A	MSITRIYRDRDNNIKVEKFSFEEVKKDLTKFFSHDNGISNRKDKNETKNFTKYTKIS
Ga0224906_10731255	F003531	GGAG	MKRKKWTENETELARQLLKTHSYATVGKMLHRSKNSVIGQFYREKIMNGYTPDPFSKYTRKKEKNIYVNN