Scaffold Ga0224906_1044561

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1044561
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1447
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F029779	Metagenome	187	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10445612	F008925	AGGAG	MTTKSKPKIDAVTLNLVNKLKQIDDTINEGAWEYIHLGDILRLQDAFHTAINHYDLKKKGGIGEHGIDAGKYTQFWHSDYVCHTDPEAFDPSKVEEDDE
Ga0224906_10445613	F029779	AGGAG	MSDKEKYEELCEALVGIDATKRYTHEDILSYVYNLKDTEEKFYDNKK
Ga0224906_10445614	F012581	AGGAG	MAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNAERLFEPSGEEFYITSIEESDD
Ga0224906_10445615	F013187	AGGAG	MPTKKIKKKPRRNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKEMQDG
Ga0224906_10445617	F105326	GGAG	MEQRRNLTPKEHWELHQGLWNILGCDMQLKYKDRTTAVYVDNKAKLKYTYSTKGFIKWFPIPKEDKI