Scaffold Ga0224906

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1019939 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022074 Open in IMG/M

Scaffold ID

Ga0224906_1019939 Open in IMG/M

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2418
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2418

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016879	Metagenome	244	Y
F017045	Metagenome / Metatranscriptome	243	Y
F017558	Metagenome / Metatranscriptome	240	Y
F035490	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10199392	F016879	AGGAG	MSVIKESFFEASFKTIEEFDNAEVAAASNVSDNAELKVMDIKLDKSLIKTNKKESNDGKEQQSIEKI
Ga0224906_10199393	F017045	AGGA	MMARSNSLLRRYEKLQTLHSEIMRPAKNPGTRQCVHSAKAFKKYIKVYRQIVGVENEDAKFIYSQL
Ga0224906_10199395	F017558	N/A	MFFIIFKNKNNIFTSYSNVIFSTEEEATDHAKRSFKRKDIWEVVRYDKENYDKYWYKI
Ga0224906_10199396	F035490	GAG	MNKIKLGKRTWVNSKGKKQKAFTFTYKENNKKVVVQSPNKQWLEQEAEKILLRIGNINPKNMNVVISVPLSHAWETYTKKCKSRANEPTTSFSKTTFKEYSEHYKHIAKHCGDVDLTKVDVEYIADFIKKIDDLDFDYKKKIFHTFARIYDTQVGMAETDPFKVNVFKTATFFKKEDAPKKKKSGKIDFEEWNFDRIKTIISKIPSEPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEVTNSVDYEKQLAPPKTEAGYREIEISASLKDQLIDYMNTLPKDQQCIFLNSKGKFHDLKNMITCLDKAVKSLNLTLPFRKTYFFRHWSVSFWCYQGKYTNPFDLATHMGDLDLKFINTNYIKKYTVSKESVKYSDHQTNNYNWN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224906_1019939

Overview

Ecosystem & Geography

Associated Families

Sequences