Scaffold Ga0224906_1019888

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1019888
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2422
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F044460	Metagenome / Metatranscriptome	154	N
F048912	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10198882	F044460	N/A	MEETDEHEEVLEHLDESISALVTKGYDLFWSNNELCYDSELKVVRSDRPRVRPRTWFCHMNEDERERLTK
Ga0224906_10198883	F048912	N/A	MDYDSYLTSFLDYEDDDGLTDEEREELKDLYEAWVIDQYETNKH
Ga0224906_10198885	F009459	N/A	MSREITLEPSVMIEELMFYIHQNEMGGDCIDPDNRFFPLYLELQKLLDKINNEKHDLYVSVTADETKTK
Ga0224906_10198886	F022875	N/A	MKLNLTDDIKENIRVRAKAHINSTDPSPDHWDSIETPDGFVDFNVWKDDDYRAGEWIVACYATYSTDDGCVHTDTSTFKRIAL