Scaffold Ga0224906_1008571

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1008571
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4062
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F010275	Metagenome / Metatranscriptome	306	Y
F024924	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10085715	F010275	GGAG	MSNNVNSTVMDNMRDNVHELWVIEGRPDLEDDCLQYCYDNIDRPVPITMIEFLSIHCSQAVSTADYRQMAMESLNAQRNHYTKED
Ga0224906_10085717	F002593	GGAG	MSKLIYSRNGSATTESIDNASPQVRWIWKQAHSFGANIVRVRADQLRYGKSTGKTFDAFHNGKVSVYKQKDNVHPDNALYFARKIPLTKVNKGMQILEIHTNIDVQDTLDTVTGIKYHSQTSFFGRLWNRIRYGTPMSITA
Ga0224906_10085719	F024924	GGAG	MKKRLNKSDRALAQNKFDQVKQAKNRIIVSFNDEEKAKRYLRSKGYRYQEVYSFKEDRAMLYKNFKNSWVKLASKFDYLNDNTLEMGTVWNIEQI