Scaffold Ga0224906_1008283

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1008283
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4145
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028800	Metagenome / Metatranscriptome	190	Y
F060424	Metagenome	133	Y
F077184	Metagenome	117	Y
F078595	Metagenome	116	N
F083396	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100828314	F077184	N/A	MKRKVRTYRITSMILMIICTVLLIKSNYHNNEKADIIDKYFDLQEEYDKIFDDVQVLEEYSEKLEEQVDLLTSFIADKEYEIDTVTSGKEVVR
Ga0224906_100828316	F083396	AGAAG	MNNEDLYHDVAVAETVDKFRRVLMNVFDGDADAMLGELESRMASNEDYETAAQMRDIRKKLNG
Ga0224906_10082833	F028800	N/A	MKIEIEDGYDGFERHVTGNIDLDGNNVYEWELDTYDGFTSIYLIDCEVRINLEDEDDLHLFNIDEEVGEEIYDEILTYVNDNGYDFIGEDFE
Ga0224906_10082834	F060424	N/A	MKRKDILSKIEETYNKIYAFTDRMGDEALNVLDDHTDRYNLADEDAILMEALVDEYDPTNLSKDTLSCLLDAYKDALADLRCE
Ga0224906_10082835	F078595	N/A	MKNKNVVISDFEIVENNLLGINTDKLINKFLELFSSDPDNMSNSKYVNKLNNFLNEINSNYICVNKLSVNDEGEIFWEFKYKYNY