Scaffold Ga0224906_1008014

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1008014
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4235
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050370	Metagenome / Metatranscriptome	145	N
F052566	Metagenome / Metatranscriptome	142	Y
F077246	Metagenome / Metatranscriptome	117	N
F091977	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100801414	F077246	AGG	MDLSNQALVVIPKSWNEIQEFINAQDHPGYATVLALMVHNYTLHKFSEMGGYQFSEWKQEYLKDVKQD
Ga0224906_100801415	F091977	N/A	MTLTEKKIQRMVDNYQFMQTCFTCWCKVSDKTVEEQMTQLYYFLRDQMEDVERIDRQEASDARHRLNGSGYAGKAGH
Ga0224906_10080147	F052566	GGA	MLDKHVYIRKDGGETWCYGTIKEDSNFSVVCEDEYNDGIWAGDLDFYPENWDQVCEYLEEYYDPHIEQLETC
Ga0224906_10080149	F050370	AGAAG	MNYIHEVYIPCAVGRQTFEDAKTLLTNIHGGCTAYNGVGHWNNEGTNTDGTTNSVQMREEVWIVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEIAVRFNYA