Scaffold Ga0224906_1007659

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1007659
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4359
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017135	Metagenome	242	N
F020172	Metagenome / Metatranscriptome	225	N
F030110	Metagenome / Metatranscriptome	186	N
F064230	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100765910	F020172	GGA	MCETVKRAMFCARNKEQHIENLEVVCTLVGRLKGISQSQYLDLCARDKLENARALYMAKHYPA
Ga0224906_100765912	F030110	GGA	MAAKAASRATQLPNPDKRIRMDGIGYSVMTDRRTVKQRNRAARQEEMRNKIEASGYETHVHEVVKKLLDPTLEFDSIEVQRMKSAADLSIKMMSKFMPDLKSTEITGADGGDLVLQVQRKRFDGDD
Ga0224906_10076592	F017135	GAGG	MIPIISCPLPGGGQALIKTQDIGGATSGKNPKECDVYILGWAANGITVDLSLDDFAEVWVSALIDEGEPEYEVVFTPDEVH
Ga0224906_10076593	F064230	AGGAG	MRSYLPQMKCTECFKIMVPQFKQEYPHKLEGWSCDCGNSEKAILRERQYTRDQDGKDQQRASG