NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1006325

Scaffold Ga0224906_1006325


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1006325 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4901
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F029779Metagenome187Y
F055714Metagenome138N
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100632512F105326AGAAGGMEQRRNLTPTQHWELHQGLWRMLGCDMKLKHKDRTKIIYVDKKINIQYTYSALGFIKEKSYANKKN
Ga0224906_100632513F013187AGGAGMPTKKIKKKPRRNTWVYIYGDECQEIWEHFGLDFPNPDDRMKLKFVKYETKEMQDG
Ga0224906_100632514F012581AGGAGMAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNPERLFEPSGTEFYITSIEESDD
Ga0224906_100632515F029779AGGAGMSDKEKYEELCEALVGIDATEKYTHEDILSYVYNLKDTEEKYYDNKK
Ga0224906_100632516F008925AGGAGMTTKSKPKIDAVTLNLVNKLKQIDDTINEGAWEYIHLGDIIRLQDAFHTIINHYGLKKQGGVPEHSEDGKYQEFWHSDYVCHTDPNAYDPSKVLGER
Ga0224906_10063258F055714AGGAGMSKWTSTSVVINSATEEMVKSALKDGWNFEILSEGEHLCENSTDFDEIMENIHAVDGVLEIHIHKEGEKSDWCNVILHNGDPDCEISDCTADGYIDKWTERTDFGQKPWNDGFK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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