Scaffold Ga0224906_1006076

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1006076
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5029
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F020115	Metagenome / Metatranscriptome	226	Y
F027835	Metagenome / Metatranscriptome	193	N
F048249	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100607610	F027835	N/A	MKTQQHIDALYERRKTAGGFEQALIDAYLRADGGNTRILEEAFKGTGFDLTPKPKYNSGVETLRNAAYWSGHRDEYLNDDKTAYQIIDEYINEKKKW
Ga0224906_10060763	F009699	N/A	MMTDKEAQAFMQKVDSSAPFWVELHNEDAPTMQIQGSTVPRCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGIKGGKQKVADAINAIHSELIGRLKEQEK
Ga0224906_10060764	F020115	N/A	MSYEQFEIFRQWAKRVANTANDTDTNIRSQDIVHDILGILANDEHFLPRL
Ga0224906_10060768	F048249	N/A	MKTSIFNTRIIRKGSQVLYRGSWGRDPQKIAVVIAIEQTQGPNEKYGDEVDAVGLDEHYVLTLNNGHWCYSYQVDGLVQLPDNESVTK