Scaffold Ga0224906_1005642

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1005642
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5242
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F034139	Metagenome	175	Y
F038722	Metagenome	165	N
F056669	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100564213	F056669	N/A	MSLIKSYVFSIQEMGYDPYNLKELSSEDWDNLLTKALKSDKKLYETLILTRCKLSLKFTDCDLTETDEPF
Ga0224906_100564215	F014114	N/A	MKNYKATDPEMIQAQEDLAKLSNLSDRVISNDKDLLDELITIQGKLCEISAIKANFMQRYEDILDEQARIETQLCVFQHEMLHSFELVFRYYKTKKKGFK
Ga0224906_10056427	F034139	GGAG	MKLEQIYETLKDFAEKEEELISRYPCDSEYDVPTWDKIYDALEILDSIINYEPSDAELEAYFNDYQDPPHVVNQRMLEMKSESHGRRFV
Ga0224906_10056429	F038722	GGAG	MNITDSRDEAFEAIAEMLRSNTKKTKIASQLAAEYCVSDKTVYKWITRVEEMYDIEPIESILLQQKSELKTEIYQDLIRDYHAAKTDKDNELRRKIGSILNNTYLKKINFN