Scaffold Ga0224906_1005133

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1005133
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5537
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F004764	Metagenome / Metatranscriptome	424	Y
F018197	Metagenome	236	Y
F023367	Metagenome / Metatranscriptome	210	N
F090509	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100513310	F004453	N/A	MGRFSCIMDIYETNFFIMLIDFTEIELETIANAMDDYINYDDEKLNTESLFGGLSVADRVNSIQDKIDKVFNN
Ga0224906_100513312	F001993	GGA	MNAEQLRYKMKNLDELCPNRSVTDDQQFHELYSKLRDLIEDTNYNIDIVDMYTALHCAMEDFDMYE
Ga0224906_100513315	F090509	N/A	MQLLTRREYNLILRSLDNYNLYMNNKEKELSETLQDKLYYNLYNPKDGIARTEAELPDINIDLEKLI
Ga0224906_100513316	F018197	N/A	MNTELPKETNIKEWTNMPPLSDELYNELVKEFNNERHYFFNDSYTIED
Ga0224906_10051335	F023367	GGAG	MKKFIFEEKFISYANVEIYAENEENARLQFQNGNYQYYDISDFTEGHELIGVTEEVCDS
Ga0224906_10051337	F004764	GGAG	MNYTNFGLEKNVEILSAHHVERFTQLRENEQYQDADAVAQEYVCKGEVEDDNYQWLYVNYHFKEAS